LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-208a-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-208a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127077-127090
0.007
12
7mer
155314-155334
0.005
1
7mer
37785-37811
0.005
0
8mer+wobble
150338-150355
0.004
4
8mer
110822-110847
0.004
0
7mer
257968-257994
0.003
1
7mer
126275-126282
0.003
1
7mer
220318-220323
0.003
0
7mer
92417-92437
0.003
0
6mer
163553-163578
0.003
5
7mer
178105-178124
0.003
1
6mer
84908-84922
0.003
5
6mer
85846-85872
0.003
6
6mer
11105-11121
0.003
1
7mer
50907-50933
0.003
1
7mer
154517-154525
0.003
2
6mer
96266-96284
0.003
0
6mer
13969-13978
0.003
1
6mer
186525-186537
0.003
3
6mer
83829-83838
0.003
2
6mer
171889-171905
0.003
1
7mer
175395-175420
0.002
2
6mer
48593-48607
0.002
1
6mer
60514-60518
0.002
4
6mer
8010-8014
0.002
2
6mer
221795-221809
0.002
0
6mer
4064-4088
0.002
5
6mer
179146-179160
0.002
4
6mer
3661-3680
0.002
1
6mer
147438-147455
0.002
2
6mer
180061-180081
0.002
2
6mer
15070-15087
0.002
1
6mer
170657-170682
0.002
1
6mer
36386-36405
0.002
1
6mer
117630-117646
0.002
1
6mer
151390-151402
0.002
1
6mer
202440-202458
0.002
0
7mer
28664-28682
0.002
0
6mer
175043-175065
0.002
1
6mer
99005-99014
0.002
1
6mer
8116-8137
0.002
6
6mer
121384-121403
0.002
Not Conserved
6mer
135897-135914
0.002
1
6mer
82538-82554
0.002
Not Conserved
6mer
244989-245014
0.002
0
6mer
54237-54262
0.002
1
6mer
151696-151718
0.002
0
6mer
253066-253084
0.002
1
6mer
89558-89575
0.002
1
6mer
176298-176302
0.002
1
6mer
4202-4222
0.002
1
7mer
8511-8535
0.002
Not Conserved
6mer
241464-241481
0.002
Not Conserved
6mer
142219-142241
0.002
1
7mer
148803-148826
0.002
0
6mer
183866-183870
0.002
2
6mer
65916-65935
0.002
0
6mer
208658-208681
0.002
1
6mer
40245-40261
0.002
Not Conserved
6mer
173351-173360
0.002
1
6mer
157334-157359
0.002
1
6mer
38151-38164
0.002
Not Conserved
6mer
63905-63920
0.002
1
6mer
224988-225010
0.002
1
6mer
23528-23548
0.002
1
6mer
182298-182316
0.002
1
6mer
245751-245770
0.002
0
6mer
210885-210909
0.002
1
6mer
90260-90280
0.002
0
6mer
46664-46676
0.002
1
6mer
128074-128099
0.002
1
6mer
125210-125227
0.002
0
6mer
8280-8301
0.002
2
6mer
1667-1683
0.002
1
6mer
7537-7545
0.001
2
6mer
75992-76002
0.001
Not Conserved
6mer
258195-258210
0.001
0
6mer
117037-117060
0.001
0
6mer
203112-203130
0.001
1
6mer
81885-81898
0.001
1
6mer
82048-82067
0.001
1
6mer
13654-13680
0.001
Not Conserved
6mer
51069-51084
0.001
1
6mer
72124-72150
0.001
1
6mer
178493-178507
0.001
1
6mer
106093-106112
0.001
0
6mer
204795-204803
0.001
2
6mer
188198-188218
0.001
1
6mer
60583-60603
0.001
3
6mer
76646-76664
0.001
1
6mer
37162-37185
0.001
Not Conserved
6mer
57251-57276
0.001
1
6mer
36494-36516
0.001
1
6mer
41400-41423
0.001
0
6mer
120792-120815
0.001
1
6mer
66058-66084
0.001
0
6mer
240243-240258
0.001
1
6mer
183612-183636
0.001
Not Conserved
6mer
154083-154104
0.001
Not Conserved
6mer
208729-208751
0.001
2
6mer
28592-28608
0.001
Not Conserved
6mer
175079-175083
0.001
0
6mer
151390-151408
0.001
2
6mer
110880-110895
0.001
0
6mer
154537-154554
0.001
Not Conserved
6mer
183646-183672
0.001
0
XLOC_011696
hsa-miR-208a-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2144-2152
0.076
0
6mer
1663-1667
0.017
0
6mer
786-799
0.004
Not Conserved
RP11-92F20.1
hsa-miR-208a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622296
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-440
0.072
10
7mer
78-99
0.014
5
LINC01189
hsa-miR-208a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3229-3252
0.024
1
6mer
2480-2487
0.016
1
7mer
647-672
0.015
1
6mer
1156-1178
0.011
1
6mer
929-955
0.011
1
HAS2-AS1
hsa-miR-208a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518865
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-133
0.055
Not Conserved
6mer
329-345
0.019
7
RP11-92F20.1
hsa-miR-208a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620050
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-426
0.070
10
AC006116.21
hsa-miR-208a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591036
Biotype: lincRNA
Gene id: ENSG00000267606
Gene Name: AC006116.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-474
0.068
1
KCNQ1OT1
hsa-miR-208a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67229-67255
0.005
1
7mer
17848-17857
0.005
1
7mer
5545-5551
0.004
0
6mer
68625-68645
0.003
3
6mer
40316-40320
0.003
1
6mer
51332-51348
0.003
1
6mer
15505-15516
0.002
1
6mer
71326-71344
0.002
1
6mer
32593-32617
0.002
0
6mer
32957-32979
0.002
0
6mer
89940-89960
0.002
1
6mer
70678-70701
0.002
1
6mer
52588-52597
0.002
1
6mer
73943-73961
0.002
1
6mer
46563-46580
0.002
1
6mer
11162-11176
0.002
Not Conserved
6mer
62455-62479
0.002
1
6mer
61560-61580
0.002
1
6mer
9615-9634
0.002
1
6mer
27674-27686
0.002
0
6mer
71081-71106
0.002
1
6mer
82123-82144
0.001
0
6mer
38589-38610
0.001
0
6mer
31716-31737
0.001
0
6mer
35418-35441
0.001
0
6mer
80972-80988
0.001
1
6mer
38701-38728
0.001
Not Conserved
AC006548.28
hsa-miR-208a-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33742-33766
0.004
Not Conserved
7mer
31371-31388
0.004
1
6mer
38845-38862
0.003
3
6mer
1058-1069
0.003
1
6mer
66227-66246
0.003
0
7mer
70336-70345
0.003
0
7mer
34687-34706
0.002
1
6mer
68513-68524
0.002
0
6mer
78048-78075
0.002
0
6mer
33975-33993
0.002
1
6mer
55811-55835
0.002
1
6mer
16882-16891
0.002
Not Conserved
6mer
59443-59463
0.002
1
6mer
67487-67512
0.002
0
6mer
28955-28982
0.002
0
6mer
9192-9208
0.002
3
6mer
42303-42324
0.002
0
6mer
35941-35950
0.002
1
6mer
53987-54007
0.002
Not Conserved
6mer
21472-21495
0.002
1
6mer
29950-29973
0.002
0
6mer
18942-18960
0.002
0
6mer
24208-24217
0.001
1
6mer
71659-71675
0.001
0
6mer
13511-13530
0.001
1
6mer
17986-18009
0.001
0
6mer
48418-48440
0.001
Not Conserved
HAS2-AS1
hsa-miR-208a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514180
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
841-863
0.035
Not Conserved
6mer
1059-1075
0.014
7
6mer
1521-1535
0.007
0
RP11-142O6.1
hsa-miR-208a-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-809
0.023
0
6mer
2286-2311
0.008
0
6mer
2366-2381
0.008
0
7mer
1033-1052
0.007
0
6mer
2072-2085
0.007
0
HAS2-AS1
hsa-miR-208a-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522197
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-307
0.051
Not Conserved
LINC00216
hsa-miR-208a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623548
Biotype: lincRNA
Gene id: ENSG00000279636
Gene Name: LINC00216
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-108
0.049
1
ERVH48-1
hsa-miR-208a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
282-301
0.025
0
6mer
1704-1708
0.025
0
DPP10-AS2
hsa-miR-208a-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446992
Biotype: antisense
Gene id: ENSG00000235717
Gene Name: DPP10-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-418
0.014
Not Conserved
7mer
455-476
0.014
Not Conserved
7mer
484-502
0.011
0
7mer
339-360
0.010
Not Conserved
RP1-8B1.4
hsa-miR-208a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444038
Biotype: antisense
Gene id: ENSG00000231769
Gene Name: RP1-8B1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-117
0.037
0
7mer
410-426
0.009
1
bP-2189O9.3
hsa-miR-208a-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
644-667
0.025
0
6mer
438-455
0.019
0
XLOC_000283
hsa-miR-208a-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001018
Biotype: transcript isomorph
Gene id: XLOC_000283
Gene Name: XLOC_000283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
336-349
0.016
1
7mer
824-832
0.015
1
6mer
819-837
0.014
1
XLOC_013703
hsa-miR-208a-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2105-2129
0.032
0
6mer
1257-1275
0.012
0
RP11-79H23.3
hsa-miR-208a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208a-3p
Sequence: auaagacgagcaaaaagcuugu
MirBase ID: MIMAT0000241
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2924-2949
0.032
Not Conserved
6mer
2782-2792
0.008
2
6mer
1724-1744
0.003
1
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